GgaEX0023800 @ galGal3
Exon Skipping
Gene
ENSGALG00000016155 | COL19A1
Description
NA
Coordinates
chr3:85777750-85805665:-
Coord C1 exon
chr3:85805603-85805665
Coord A exon
chr3:85795739-85795792
Coord C2 exon
chr3:85777750-85777803
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGAATAATTTATTTTGTAGGGT
3' ss Score
7.1
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGAGAAGCAGGATTACCAGGAGTTGCTGGTTTGCCAGGCCAGAAAGGGCATAAAGGTGAAAAG
Seq A exon
GGTGAGATGGGTGCAAAAGGACAGGATGGTGCTGCTGGTCTTCCTGGTGAAAAG
Seq C2 exon
GGGGACACTGGCTTAGTGGGTGCTCCTGGCATACCTGGTCTTACTGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016155_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(34.5=100)
A:
PF0139113=Collagen=FE(27.4=100)
C2:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(15.1=61.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCAGGATTACCAGGAG
R:
CTTGGAACCAGTAAGACCAGGT
Band lengths:
117-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]