GgaEX0023800 @ galGal4
Exon Skipping
Gene
ENSGALG00000016155 | COL19A1
Description
collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2196]
Coordinates
chr3:82420812-82448727:-
Coord C1 exon
chr3:82448665-82448727
Coord A exon
chr3:82438801-82438854
Coord C2 exon
chr3:82420812-82420865
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGAATAATTTATTTTGTAGGGT
3' ss Score
7.1
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGAGAAGCAGGATTACCAGGAGTTGCTGGTTTGCCAGGCCAGAAAGGGCATAAAGGTGAAAAG
Seq A exon
GGTGAGATGGGTGCAAAAGGACAGGATGGTGCTGCTGGTCTTCCTGGTGAAAAG
Seq C2 exon
GGGGACACTGGCTTAGTGGGTGCTCCTGGCATACCTGGTCTTACTGGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016155_MULTIEX1-1/7=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.3=100)
A:
PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(15.1=61.1)
Main Inclusion Isoform:
ENSGALT00000026059fB2986
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGCAGGATTACCAGGAG
R:
CTTGGAACCAGTAAGACCAGGT
Band lengths:
117-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]