GgaEX0024005 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89924956-89928135:+
Coord C1 exon
chr3:89924956-89924973
Coord A exon
chr3:89925361-89925432
Coord C2 exon
chr3:89928018-89928135
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTCTATATCTTGTTTTTTAGGCT
3' ss Score
9.78
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
TTCTTCCTGGGAAATCAG
Seq A exon
GCTATCAGACTAAAGACCAATCACAGTAACCATGTATCCAATGATGATATCATTTATTTATTGCAACTCAAG
Seq C2 exon
TTTGGTGACTCTCAACAACTACGCCTTGTTCGTATCCTAAGAAGTACGGTCATGGTTCGTGTTGGAGGTGGCTGGATGGCACTTGATGAGTTCTTAGTGAAAAATGATCCTTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'105-108,'105-106,106-108
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(6.3=100)
A:
PF0218712=GAS2=PD(25.5=54.2),PF0218712=GAS2=PU(6.5=12.5)
C2:
PF0218712=GAS2=FE(49.4=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]