GgaEX0024004 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89924053-89928135:+
Coord C1 exon
chr3:89924053-89924127
Coord A exon
chr3:89924956-89924973
Coord C2 exon
chr3:89928018-89928135
Length
18 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCATTTCTTATCAGTTC
3' ss Score
7.64
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTTACAAGACAAGTAGCTAAATGTAAATGTGCAAAACGGTTTCAAGTGGAACAGATTGGGGATAACAAGTACAGG
Seq A exon
TTCTTCCTGGGAAATCAG
Seq C2 exon
TTTGGTGACTCTCAACAACTACGCCTTGTTCGTATCCTAAGAAGTACGGTCATGGTTCGTGTTGGAGGTGGCTGGATGGCACTTGATGAGTTCTTAGTGAAAAATGATCCTTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(49.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAAAACGGTTTCAAGTGG
R:
CCTCCAACACGAACCATGACC
Band lengths:
116-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]