DreEX0004494 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1564723-1571453:+
Coord C1 exon
chr13:1564723-1564797
Coord A exon
chr13:1568831-1568848
Coord C2 exon
chr13:1571337-1571453
Length
18 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCCCCCACATCAGTTC
3' ss Score
6.65
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GTGACTCGCCAAGTTGCGAAGTGCAAGTGCCCCAAACGCTTCCAAGTAGAGCAGATCGGAGCCAACAAATATCGG
Seq A exon
TTCTACCTTGGGAATCAG
Seq C2 exon
TTTGGTCTGGTTCACTGCTTACATGACCCCTTAATCGCCGACGAGACTATAACAAACAGGGACAATCAAAATCTAACCCCACATCTACACGTTGCCGTTTTGGAAAGCTGTATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858-'61-63,'61-62,62-63
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(49.0=100)
A:
PF0218712=GAS2=FE(10.2=100)
C2:
PF0218712=GAS2=PD(22.4=28.2),PF0218712=GAS2=PU(17.3=23.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGGAGCCAACAAATATCGG
R:
GCAACGTGTAGATGTGGGGTT
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]