RnoEX0030001 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37910962-37915247:-
Coord C1 exon
chr9:37915173-37915247
Coord A exon
chr9:37914028-37914045
Coord C2 exon
chr9:37910962-37911079
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTGTTTTATCAGTTC
3' ss Score
7.07
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTCACGAGGCAGGTGGCCAAGTGTAAGTGCGCCAAGCGGTTCCAAGTTGAGCAGATCGGAGACAACAAATACAGG
Seq A exon
TTCTTCCTGGGAAATCAG
Seq C2 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACCGTGATGGTCCGTGTTGGAGGTGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAACGATCCGTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'148-148,'148-146,149-148
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(49.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTCCAAGTTGAGCAGAT
R:
CATCCATCCACCTCCAACACG
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]