MmuEX0015771 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34352307-34356683:+
Coord C1 exon
chr1:34352307-34352381
Coord A exon
chr1:34353587-34353604
Coord C2 exon
chr1:34356566-34356683
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTGTTTTATCAGTTC
3' ss Score
7.07
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTCACAAGGCAGGTAGCCAAGTGTAAGTGTGCCAAGCGATTCCAAGTTGAACAGATCGGTGATAACAAATACAGG
Seq A exon
TTCTTCCTGGGAAATCAG
Seq C2 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACAGTGATGGTTCGTGTTGGAGGCGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAATGATCCCTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'135-133,'135-132,137-133=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(49.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCAAGCGATTCCAAGTT
R:
CATCACTGTGCTTCGCAGGAT
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: