MmuEX0015771 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34295462-34299838:+
Coord C1 exon
chr1:34295462-34295536
Coord A exon
chr1:34296742-34296759
Coord C2 exon
chr1:34299721-34299838
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTGTTTTATCAGTTC
3' ss Score
7.07
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTCACAAGGCAGGTAGCCAAGTGTAAGTGTGCCAAGCGATTCCAAGTTGAACAGATCGGTGATAACAAATACAGG
Seq A exon
TTCTTCCTGGGAAATCAG
Seq C2 exon
TTTGGAGACTCCCAGCAGCTGCGACTGGTTCGGATCCTGCGAAGCACAGTGATGGTTCGTGTTGGAGGCGGATGGATGGCTCTGGATGAGTTCTTAGTGAAAAATGATCCCTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'180-169,'180-168,183-169
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(30.4=100)
A:
PF0218712=GAS2=FE(6.3=100)
C2:
PF0218712=GAS2=FE(49.4=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCAAGCGATTCCAAGTT
R:
CATCACTGTGCTTCGCAGGAT
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types