DreEX0004495 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1568831-1573992:+
Coord C1 exon
chr13:1568831-1568848
Coord A exon
chr13:1571337-1571453
Coord C2 exon
chr13:1573875-1573992
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCAAACCACTCTTTTGACAGTTT
3' ss Score
5
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
TTCTACCTTGGGAATCAG
Seq A exon
TTTGGTCTGGTTCACTGCTTACATGACCCCTTAATCGCCGACGAGACTATAACAAACAGGGACAATCAAAATCTAACCCCACATCTACACGTTGCCGTTTTGGAAAGCTGTATCCTG
Seq C2 exon
TTCGGAGATTCCCAGCAGCTACGTCTGGTGCGGATCCTGCGCAGTACAGTGATGGTGCGGGTGGGTGGAGGCTGGATGGCCCTGGACGAGTTCCTGGTGAAAAATGACCCGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858-'62-65,'62-63,63-65
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=FE(10.2=100)
A:
PF0218712=GAS2=PD(22.4=28.2),PF0218712=GAS2=PU(17.3=23.1)
C2:
PF0218712=GAS2=FE(75.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]