GgaEX6031944 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86364748-86385433:+
Coord C1 exon
chr3:86364748-86364825
Coord A exon
chr3:86367065-86367157
Coord C2 exon
chr3:86385267-86385433
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTCCCATGTGGCAGGTG
3' ss Score
7.49
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCCGAGAAAAAGGTCGGATGCGTTTTCACAGACTCCAGAACGTCCAAATTGCACTTGACTATTTGAAAAAGCGCCAG
Seq A exon
GTGAAACTGGTCAACATTAGGAATGATGACATAACAGATGGGAATCCCAAGTTGACTTTGGGGTTGATATGGACCATAATTTTGCACTTTCAG
Seq C2 exon
ATATCTGATATCCATGTTACTGGAGAGTCAGAGGACATGTCTGCTAAAGAAAGATTGCTCCTGTGGTCACAGCAGACAACTGAGGGTTATGCTGGAATCCGTTGTGAAAATTTCACTACCTGCTGGCGTGATGGAAGATTATTTAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.1=100)
A:
PF0030726=CH=FE(33.7=100)
C2:
PF0030726=CH=PU(39.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGACTCCAGAACGTCCA
R:
CACGCCAGCAGGTAGTGAAAT
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]