MmuEX6023486 @ mm10
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34116118-34135256:+
Coord C1 exon
chr1:34116118-34116195
Coord A exon
chr1:34117432-34117524
Coord C2 exon
chr1:34135090-34135256
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCACCTACAAACAGGTG
3' ss Score
9.55
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCCCGGGAGAAGGGTCGGATGCGTTTTCACAGGCTACAGAACGTACAGATTGCACTCGACTATTTGAAAAGACGCCAG
Seq A exon
GTGAAGTTGGTGAACATCAGAAATGATGACATAACAGATGGAAATCCTAAGCTGACTTTGGGGTTAATATGGACAATAATTCTGCACTTTCAG
Seq C2 exon
ATATCTGACATCCATGTCACTGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGCTGCTCCTGTGGACACAGCAGGCGACAGAAGGCTATGCTGGGGTGCGGTGTGAAAACTTCACTACCTGCTGGAGAGATGGGAAACTATTCAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'36-30,'36-27,39-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(24.8=100)
A:
PF0030726=CH=FE(29.7=100)
C2:
PF0030726=CH=PU(39.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGCGTTTTCACAGGCTA
R:
TGAAGTTTTCACACCGCACCC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types