HsaEX6047843 @ hg19
Exon Skipping
Gene
ENSG00000151914 | DST
Description
dystonin [Source:HGNC Symbol;Acc:1090]
Coordinates
chr6:56535439-56566763:-
Coord C1 exon
chr6:56566686-56566763
Coord A exon
chr6:56564451-56564543
Coord C2 exon
chr6:56535439-56535605
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCACATTCAAAACAGGTG
3' ss Score
8.64
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCAGAGAAAAAGGTCGGATGCGTTTTCACAGACTACAGAATGTACAAATTGCACTTGACTATTTGAAAAGACGCCAG
Seq A exon
GTGAAATTAGTGAATATTAGAAATGATGACATAACAGATGGAAATCCCAAATTGACTTTGGGATTAATCTGGACAATAATTTTGCACTTTCAG
Seq C2 exon
ATATCTGATATCCATGTTACTGGAGAGTCAGAGGATATGTCTGCAAAAGAGAGATTGCTACTCTGGACGCAGCAGGCAACAGAGGGTTATGCTGGAATTCGGTGTGAAAATTTCACTACCTGCTGGAGAGATGGAAAATTATTTAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151914-'21-27,'21-24,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(24.8=100)
A:
PF0030726=CH=FE(29.7=100)
C2:
PF0030726=CH=PU(39.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTCGGATGCGTTTTCACA
R:
ACACCGAATTCCAGCATAACCC
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)