GgaEX6031944 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89756929-89777614:+
Coord C1 exon
chr3:89756929-89757006
Coord A exon
chr3:89759246-89759338
Coord C2 exon
chr3:89777448-89777614
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTCCCATGTGGCAGGTG
3' ss Score
7.49
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCCGAGAAAAAGGTCGGATGCGTTTTCACAGACTCCAGAACGTCCAAATTGCACTTGACTATTTGAAAAAGCGCCAG
Seq A exon
GTGAAACTGGTCAACATTAGGAATGATGACATAACAGATGGGAATCCCAAGTTGACTTTGGGGTTGATATGGACCATAATTTTGCACTTTCAG
Seq C2 exon
ATATCTGATATCCATGTTACTGGAGAGTCAGAGGACATGTCTGCTAAAGAAAGATTGCTCCTGTGGTCACAGCAGACAACTGAGGGTTATGCTGGAATCCGTTGTGAAAATTTCACTACCTGCTGGCGTGATGGAAGATTATTTAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.4=100)
A:
PF0030726=CH=FE(34.1=100)
C2:
PF0030726=CH=PU(39.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGACTCCAGAACGTCCA
R:
CACGCCAGCAGGTAGTGAAAT
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]