BtaEX6096707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3433718-3459333:+
Coord C1 exon
chr23:3433718-3433795
Coord A exon
chr23:3436027-3436119
Coord C2 exon
chr23:3459167-3459333
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCATATACAAAACAGGTG
3' ss Score
5.8
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCAGAGAGAAGGGTCGGATGCGTTTTCACAGACTCCAGAATGTACAAATTGCACTTGACTATTTGAAAAGACGCCAG
Seq A exon
GTGAAATTAGTGAATATTAGAAATGATGACATAACAGATGGAAATCCCAAATTGACTTTGGGATTAATATGGACGATAATTTTGCACTTTCAG
Seq C2 exon
ATATCTGATATCCATGTTACTGGTGAGTCAGAAGACATGTCAGCGAAAGAGAGACTGTTACTGTGGACGCAGCAGGCCACGGAGGGTTATGCCGGGATTCGGTGTGAAAATTTCACCACCTGCTGGAGAGATGGGAAATTATTTAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(28.7=100)
A:
PF0030726=CH=FE(34.5=100)
C2:
PF0030726=CH=PU(39.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGGTCGGATGCGTTTTC
R:
CGAATCCCGGCATAACCCTC
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]