RnoEX0029999 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38076236-38095774:-
Coord C1 exon
chr9:38095697-38095774
Coord A exon
chr9:38094428-38094520
Coord C2 exon
chr9:38076236-38076402
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCCCGTGCAAACAGGTG
3' ss Score
10.09
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCCCGAGAGAAGGGTCGGATGCGCTTTCACAGGCTACAGAATGTACAGATTGCACTCGACTATTTGAAAAGACGCCAG
Seq A exon
GTGAAGTTAGTGAACATTAGGAATGATGACATAACAGATGGGAACCCCAAGCTGACGTTGGGGTTGATATGGACAATAATTCTGCACTTCCAG
Seq C2 exon
ATATCTGACATCCATGTCACCGGAGAGTCAGAGGACATGTCTGCGAAAGAAAGGTTGCTGCTGTGGACACAGCAGGCGACAGAAGGTTATGCCGGAGTGCGGTGTGAAAACTTCACTACCTGCTGGAGAGATGGGAAGCTATTTAATGCCATCATTCATAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'14-7,'14-5,15-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(22.1=100)
A:
PF0030726=CH=FE(26.5=100)
C2:
PF0030726=CH=PU(39.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTTTCACAGGCTACAGAA
R:
AAGTTTTCACACCGCACTCCG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]