GgaEX0024217 @ galGal3
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98757926-98762617:-
Coord C1 exon
chr3:98762391-98762617
Coord A exon
chr3:98761404-98761472
Coord C2 exon
chr3:98757926-98758033
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGCAATATTATCAGGGA
3' ss Score
7.07
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGTTCGTGCTGCAAGAGATCAAATGAACATAGGAGGACTTCCTTATCCCACATTGCCTTTACATGAGGCACCTGCCAGAGCAGCGTCTCTTTTCAGTCAGCCTTCATCAGCCTGCTCTTCTACAACCTCTTTCAATGGACCTTTCAACAGTGGAGTTCTATCACCCCAACCTCACAGCAGTTACTATAGTGGTATGACAGGACCTCAGCATCCGTTCTACAATCGG
Seq A exon
GGAGAAAAAGATATTCAGGAAGCGGATGCAAGTCATAGATTGTTTCTGTATGCAGTTTTAAGTAGTGAG
Seq C2 exon
CCATTCTTTGCCCCATGTCTTTACATGCCAAGGTATTACCCTGGCAGTTCTCATCTCATCTCACGTCCACTAAAAACGAGTTTGTCCAGAGATCAGAGCAATGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409-'32-33,'32-31,33-33
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.174 C2=0.287
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCACCCCAACCTCACAGCA
R:
GGCCATTGCTCTGATCTCTGG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]