GgaEX0024223 @ galGal3
Exon Skipping
Gene
ENSGALG00000016411 | COL14A1
Description
NA
Coordinates
chr2:142505583-142507170:+
Coord C1 exon
chr2:142505583-142505738
Coord A exon
chr2:142506524-142506597
Coord C2 exon
chr2:142507078-142507170
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTCCTGTTTTAAGGCC
3' ss Score
8.61
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GACCTCCAGGCGAGAGCCGAACTGGCAGCCCAGGCCCACCAGGCTCTCCAGGCCCACGAGGCCCTGCTGGCCACACTGGGCCCCCTGGCTCCCAGGGCCCCGCCGGCCCCCCGGGGTACTGTGACCCCTCCTCCTGTGCTGGCTATGGTATGGGAG
Seq A exon
GCCCAATCCCTTACAATGGCTACCAATCCAGAAGGTGAAAGACTCATTCTGGTTCAGTTCTCATTTGGCTGAAG
Seq C2 exon
GTGGATACGGTGAGCCAACTGATCAAGACATCCCAGTAGTGCAGTTGCCACATAACTCCTACCAAATCTATGACCCCGAGGACCTTTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411-'52-58,'52-57,54-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(74.1=86.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCAGGCTCTCCAGG
R:
ATGTGGCAACTGCACTACTGG
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]