GgaEX0024223 @ galGal4
Exon Skipping
Gene
ENSGALG00000016411 | col14A1
Description
collagen alpha-1(XIV) chain precursor [Source:RefSeq peptide;Acc:NP_990665]
Coordinates
chr2:136487989-136489807:+
Coord C1 exon
chr2:136487989-136488144
Coord A exon
chr2:136488930-136489003
Coord C2 exon
chr2:136489482-136489807
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTCCTGTTTTAAGGCC
3' ss Score
8.61
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GACCTCCAGGCGAGAGCCGAACTGGCAGCCCAGGCCCACCAGGCTCTCCAGGCCCACGAGGCCCTGCTGGCCACACCGGGCCCCCTGGCTCCCAGGGCCCCGCCGGCCCCCCGGGGTACTGTGACCCCTCCTCCTGTGCTGGCTATGGTATGGGAG
Seq A exon
GCCCAATCCCTTACAATGGCTACCAATCCAGAAGGTGAAAGACTCATTCTGGTTCAGTTCTCATTTGGCTGAAG
Seq C2 exon
GTGGATACGGTGAGCCAACTGATCAAGACATCCCAGTAGTGCAGTTGCCACATAACTCCTACCAAATCTATGACCCCGAGGACCTTTATGATGGTGAGCAACAGCCGTACGTAGTTCACGGGTCCTACCCTTTACCATCCCCATACTCCCAGTCCTCCTATCCATCACCTCATCTTGCTCAACCAGAGTTTACTCCAGTTCGAGAAGAGATGGAAGCCGTTGAGCTGAGATCCCCCGGAATTAGTCGCTTCAGAAGGAAGATAGCCAAAAGAAGCATCAAGACTCTGGAACACAAAAGGGAAAATGCAAAAGAGCCCTCTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016411_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.923
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(74.1=81.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000026472fB3059
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTGGCTATGGTATGGGA
R:
GACTGGGAGTATGGGGATGGT
Band lengths:
176-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]