GgaEX0025451 @ galGal3
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181405682-181407218:+
Coord C1 exon
chr1:181405682-181405731
Coord A exon
chr1:181406237-181406437
Coord C2 exon
chr1:181407084-181407218
Length
201 bp
Sequences
Splice sites
3' ss Seq
CGCATCTGTTCATGTTCCAGGTG
3' ss Score
9.79
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTCTTGATAGAGAAAGACTGGATTTCTTTCGGGCACAAGTTCTCTGACAG
Seq A exon
GTGCTGTCAGTTGGATGGTGATCCAAAAGAGATCTCGCCAGTGTTCACTCAGTTTTTAGAGAGTGTGTGGAATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTATAATGAAGCTTTCCTCCTTCAGATCCATGAACATGTCCACTCGTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAAAAAGAACGAGAAGAACTGAA
Seq C2 exon
GTTAAAAGAGAAGACATATTCCCTGTGGCCTTTCCTTCTAGATGAACAAAAGAAATACCAGAATCCTCTGTATAATCCAAGTTTTTCTCCGAATCTAACTCTTTTGGAGCCTAATACTGTGTCATTCAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1),PF097894=DUF2353=PU(12.0=25.0)
C2:
PF097894=DUF2353=FE(31.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGATAGAGAAAGACTGGATTTC
R:
ATTGAATGACACAGTATTAGGCTCCA
Band lengths:
180-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]