MmuEX6041912 @ mm9
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60914957-60917031:+
Coord C1 exon
chr14:60914957-60915006
Coord A exon
chr14:60915411-60915611
Coord C2 exon
chr14:60916900-60917031
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTCTGGGGTGTAGGTG
3' ss Score
7.23
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTTCAGAGAG
Seq A exon
GTGTGGCCATTTGGATGGAGACCCGAGGGAGGTCTCACCAGTGTTCACTCAGTTCTTGGAGTGTGTCTGGCACCTGACTCAGCAGTTCCCACAAGCCTTCGAGTTCAACGAAGCGTTTCTTCTTCAGATCCATGAGCACATTCATTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGGAGAGAGAGGAACTCAG
Seq C2 exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCTTTTCTTTTGGATGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGACTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-'13-14,'13-12,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
PF060089=Laminin_I=PU(31.1=71.1),PF102434=MIP-T3=PU(3.3=4.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAAGATTGGATATCATTTGGGC
R:
AAAATTGAAAGAGGCTGTATTTGGCT
Band lengths:
172-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: