GgaEX0025511 @ galGal3
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183530289-183532523:-
Coord C1 exon
chr1:183532369-183532523
Coord A exon
chr1:183531733-183531805
Coord C2 exon
chr1:183530289-183530443
Length
73 bp
Sequences
Splice sites
3' ss Seq
TACCCTGTTGAAAAAAACAGATG
3' ss Score
2.25
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCATGTAAAAGAGGAAATTCGGACATCGTGCGACTTATGATTGAAAGCGGAGCAGACTGTAACATTTTGTCAAAGCATCAGAACAGTGCACTACATTTTGCTAAGCAGTGTAACAATGTCCTGGTGTACGAACAGCTCAAGAGTCATTTGGAAAC
Seq A exon
ATGAAGGAAAAAAGGTGGAAGGAAAGTAGAGATCATCAGAGATAGAGGACCTTCAGTGAGCAGACAGAATGAG
Seq C2 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'16-19,'16-18,17-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(54.8=100)
A:
NO
C2:
PF127962=Ank_2=PD(5.4=9.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGCATCAGAACAGTGCACT
R:
GACGGTGACAAGCAATTGGGA
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event