GgaINT0112895 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183530289-183532523:-
Coord C1 exon
chr1:183532369-183532523
Coord A exon
chr1:183530444-183532368
Coord C2 exon
chr1:183530289-183530443
Length
1925 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TTGCTTGTTTCCTCATGTAGACT
3' ss Score
8.05
Exon sequences
Seq C1 exon
GCATGTAAAAGAGGAAATTCGGACATCGTGCGACTTATGATTGAAAGCGGAGCAGACTGTAACATTTTGTCAAAGCATCAGAACAGTGCACTACATTTTGCTAAGCAGTGTAACAATGTCCTGGTGTACGAACAGCTCAAGAGTCATTTGGAAAC
Seq A exon
GTGAGTAAACTGTACTTGGAAGTTCGGTCTGGGGAAGTGTGAATTAACTGTGTAATCATTTTGGATTGAGTTGGGGAAGAGGGAGAGGTTTTGGGAAGAAAGTATGGAGTATGCCAATTCTTCCCCAGCCTGGTTCTAAGAAGGAAATCATGGCATGTTCAGTTAGGTTTTTGAAGGCAACAGAAAGTATGCAGATAAAGCTTGGCACGTGCTGTTCAGTGAATTTAATCTTTCTTGCATTCACTGTTCGATGCCTTCTCCATCTGCTATTTAAAGTCTGCCACCAAATGTGCTTTGTAAGATCTTGAACGTGTAACTTTACCAGTGAAATGTCAGGTGAAACTAAATACTGATAAGTGCAAAGTGATGTCTGTGGGGTATCACTGAAGTAACGGCTCCTGCCAGTTGAGAAAGCTACACTCATTGTAAATAATCAGTGCTTCTTTTCAATCAGAAAGGAAGCCAACATAGTAGTAGTGAAGTTGAAAGTAAAATCTAAATCCGTGTTGCCTGAACATCTTAAATAGCATGTCCCATTTTGGCTACCCTGTTGAAAAAAACAGATGAAGGAAAAAAGGTGGAAGGAAAGTAGAGATCATCAGAGATAGAGGACCTTCAGTGAGCAGACAGAATGAGGTGAGCATGTCCCCCTGGGACAGATTAAAAGCTCAAAATCCTTCTGAAGAATGGAAAAAAAAGTGGGGGGGAGGGGGGAGGAAAGGGGCAGTGTGAAACATAAGTCATCTTCCAGAGGCCATCCACTGAAATGATTGATAGATTAGAAACTGGGAGATATTTTTTGCACAGGAAAGCTGAATTATGGATCTTGCTGCAGAATGTTATGGCCACTGTTGTATGGGAGTTTCAAAGGGATTAAGTAAATCTGCAGAGGTGTACTTTGGCTGCATTGTCTGATTCTGGATGCTTCCAAACCAGATGGCTGGAATCTGGGACAGCGTGCCACAAAAAGCCAACTGTAATTTCCCTTAGCTTGGTCTGGAAGTTGAGTTAGGTGGGCTCCTGGGCTTGTGTTGATGTGGCATTCTGGTGGTTTCCTTCCAGTGGAAAACAAGATCAGGGTTCTGTGGATGATGGTCTCATGCAGCGTGGAGGGGAACCATGCTTGCAGTAATGGCTCAGGAGGCTGCAAGGCTGAGGGTCAGGACTTTACCTTGCACAGCTATCAAAAACTCATTGTATCAGAGGAGCGTTCTGAAATGCGGTACATAGCAACTGGCCCATAAAAGTGCTGGTTAACTCAGTATCTCTTCTGAAGGCCAGGCTGTGTGCTTACACAAGCAGTCCCTCTGCCCTTCCCAAATAGCCCCCACCTCCCAAACTGTCTAAACAATGGAATTGCTTTTTTTAGGGATGTGGTTAGTGGGCGTAGCGGTGATGGGCTGACAATTGGACTGAATGATCTTAGTGGTCTTTTCCAACCTTAATGATTCTGTGGTTTTAATAAAGCTTAATTTGGGAATTGCATTACACTAATAGTATGACCAATAAAAGGGAGTGATTTGTTTTACCCTGTACTTGGCAGTCATTTTACTGGGGGAAGCAGTCACCTGTTTCTGTTCAGCTAGTGGTGCCTACTGGTGTTTCAGGAACACTTTTCTACATAAAGAAGTATGTGGTTACTGAGACTTCTGGTGTCTGCTGTAGTGTTCTTGTCCACAAAAGTAAAATGCTGAGACCTGACAGATGGAATTTCACAAACAGGTCTCCGATAAAATGTTAAAATGTTTTATTAACAAAATGTTGGGACCTGGGGCTCATCTGTGCATAAATGTAGGTGATGAAGTCCTGACAACTGGGAAGGCGAAAAGGAAATCTAGAATCGTTCTTTGTATAATCTCTCTTCAAGACTGTCTGCTGAAGTAATGATAGTGTGAAGTACAGGCCTTGCTTGTTTCCTCATGTAG
Seq C2 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(54.8=100)
A:
NA
C2:
PF127962=Ank_2=PD(5.4=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTAAAAGAGGAAATTCGGACA
R:
CACATTCTGTGGGGGTTTATAGT
Band lengths:
303-2228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]