HsaINT0104630 @ hg19
Intron Retention
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:29810]
Coordinates
chr13:20240565-20242671:+
Coord C1 exon
chr13:20240565-20240719
Coord A exon
chr13:20240720-20242516
Coord C2 exon
chr13:20242517-20242671
Length
1797 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
GTACTATTTTTTTTTCTTAGACT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCCTGTAAAAGAGGAAATTCAGACATCGTACGACTCGTAATTGAATGTGGAGCTGACTGCAATATTTTGTCAAAGCACCAGAATAGTGCCCTGCACTTTGCGAAGCAGTCTAACAATGTGCTTGTGTACGACTTGCTGAAGAACCATTTAGAGAC
Seq A exon
GTAAGTGAGAAGCGACTGTGCCATAGTTAAGTCACATATCATACATCTGTTTATGTAGACATATTATAATTGGAGTGGCCTGTGTGTAACTGCTCAGAAAAACATCCAGCACAAGTCCTGATGGTTTTGTTTCCAGTAGATCACAGATTTAATAAATGGCATATGAATTATTTTTCTGCAAGTTATTTAACTCTCAGAAAATTTCAAACTTAACACTGGCCTATCTGGGAGTATTTTCCTTAAATATTAAGTATGCTCTTAATTTGGTTAGCAAAGGTTTTCTTAAAAACATTTAAACTTGGCCGGGCGCAGTGGCTCACGCTTGTAATCCTAGTACTTTGGGAGGCCGAGGCGGGTGGATCACTTAAGGTCAGGAGTTTGAGACCATCCTGGCCAACATGATGAAACCCTGGCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGTGGGTACCTGTAACCCCAGCTACTCAGGATGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGACCTGAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCAACACTCTGTTTCCGCCCCCCACCACCAAAAAAAGAAAGAAACTTTAAACATTTGTCTTTCTTTTTAATAGACTTTATTTTTTGCAACACTTTTAAGCACAGCAAAGTTGAGCGGAGGGTACAGATTTCCAAGCCTCCCCACCGCCATCCTCCCCGACTGTCGAGATCCCAGTCACCCACAGTGGGACATACAGCTGGGGAACCTACAGGGACATGGCATAATCCCCTGGAGCGCAGCATTGACATTAGGGCTCACTCGTAGTGTTACCCATTCTATGAATTTGGACAAATACATAATGACATCCATCCCTCATCACAGTGTCATACAGAATAGTTTCACTGCCTTAAAAAGCCTGTGTTTTCCACCTTTTCATCCCTCCCTCCCCCAGCCCCTGACAACCACCAGTAATTTAATTCCTTCATATTTTGCCCTTTCCAGAACAGGTGGAATCACACATTATTTGGTCTTTGCAGGTTGGCCTCTTTCATTTAGCAATAGGCATTCAAGATTCCTTCCATGTCTTGATAGTGCATTTCTGTTTAGCACTGACTAATATTCTGTTGTTGGTTGTCAAGATTTACTAGTTTATTCAAGTTCATTCTTTTTCAAATAAATTCTCAATCATATTTTATTTTATTGCAGGTTCATACTTATAACACAATTTAGTATTTCTATCACTTAAGAACTCTTGGCAACACATATCAGAAACTTGCATGTATCAGACAGTAGCGAACTCAAGGCGGTGTTTATGTAGCAGGTCTCGGGTGGGCCTCTGGGACCGCGCCTGTTGAACTCAGTGCTGCTGATGGCTGCAGTCCCAACTCCTCTGGTCACACGGGGGGTTTGCATAGATCCAGCAAGTAGAGTGACCCACTTTCCTGATTTGCCCAGTACTGAGGGGTTCCCCTTTCTGATTTTCCACTGATTCATTAGACAACTATGTATTAAGCATAGACTTTGTGCCAGGCACTGTTCTAAAGGCTGGGGAGATGGAAATGGCAGTGGAGGGAAGAGACTTGCCTTCTTAGAACTTCAATTCCACTGAGATGGACAACAAGACAGACACATGGGTGTCAGGTGCTTGGTGGAAGTAGAGCTGGAAAGCGGAGGCAGGCAGAGCTGCAGGTCTTTGTTTGGAAGGTTGGCCTGGGAAGCCCTCACTGGTATTCGACAGGCTTGTGGTTCTTTTCTACATTAACGTTAACACGTACTATTTTTTTTTCTTAG
Seq C2 exon
ACTTTCAAGAGTAGCAGAAGAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTTTCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACATACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199-MPHOSPH8:NM_017520:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(72.7=46.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTAAAAGAGGAAATTCAGACA
R:
CTTCTGGTATGTTCTGTGGGGG
Band lengths:
310-2107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)