GgaEX0025939 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79189979-79193467:+
Coord C1 exon
chr1:79189979-79190177
Coord A exon
chr1:79190627-79190744
Coord C2 exon
chr1:79193242-79193467
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGGTATTTGTTACTTCCAGCAG
3' ss Score
5.02
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGAGAAGTATCCAGTGCTTCAGTTCTTTTTTTTTTTTTTTTTTTCCTACAGGAAATGGGATTGAAAATTATGTCCAACACCAATATCAGGAAACCAAGACTGTGTCTAACTACTCAGTCAACAACCATGATGCAGGAAAGAGGGATGTTCACTTCCAGGCCTATGTTGATGTTTGCTCAGCCCCATAAGGAATCTAACA
Seq A exon
CAGGACATCTGATGACATCTACCTATCAGCCCACTATGTTTTCACCTGTTTCTTCACCTGAGGAGAAAGTGCACAAGTATTTCACAAAAACCTGGCTATGGGATTTGTATTCTGTCGG
Seq C2 exon
TCCCAGTGGAAAACAGACTGTCACTGTCACTGTACCTAACACCATCACAGGATGGAAAGCTGGGATGTTCTGCACAGGACATAATGGCTTCGGACTTGCTCCAACCTCCAGTCTGCTTGTTTTCAAGCCCTTTTCTGTGGAGCTCACACTTCCGTCTTCTGTGATCCAGGGTGAGACCTTCATCTTGAAGGCCACAGTCCTCAGCTACCTGCAACAATGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-13/25=12-14
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0020717=A2M=PU(10.0=22.5)
C2:
PF0020717=A2M=PD(35.6=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCTCAGCCCCATAAGG
R:
TTGCAGGTAGCTGAGGACTGT
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event