GgaEX0025939 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75547657-75551094:+
Coord C1 exon
chr1:75547657-75547804
Coord A exon
chr1:75548254-75548371
Coord C2 exon
chr1:75550869-75551094
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGGGTATTTGTTACTTCCAGCAG
3' ss Score
5.02
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAAATGGGATTGAAAATTATGTCCAACACCAATATCAGGAAACCAAGACTGTGTCTAACTACTCAGTCAACAACCATGATGCAGGAAAGAGGGATGTTCACTTCCAGGCCTATGTTGATGTTTGCTCAGCCCCATAAGGAATCTAACA
Seq A exon
CAGGACATCTGATGACATCTACCTATCAGCCCACTATGTTTTCACCTGTTTCTTCACCTGAGGAGAAAGTGCACAAGTATTTCACAAAAACCTGGCTATGGGATTTGTATTCTGTCGG
Seq C2 exon
TCCCAGTGGAAAACAGACTGTCACTGTCACTGTACCTAACACCATCACAGGATGGAAAGCTGGGATGTTCTGCACAGGACATAATGGCTTCGGACTTGCTCCAACCTCCAGTCTGCTTGTTTTCAAGCCCTTTTCTGTGGAGCTCACACTTCCGTCTTCTGTGATCCAGGGTGAGACCTTCATCTTGAAGGCCACAGTCCTCAGCTACCTGCAACAATGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0020717=A2M=PU(10.0=22.5)
C2:
PF0020717=A2M=FE(83.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGCTCAGCCCCATAAGG
R:
TTGCAGGTAGCTGAGGACTGT
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]