GgaEX0025944 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75537014-75538429:+
Coord C1 exon
chr1:75537014-75537176
Coord A exon
chr1:75537525-75537577
Coord C2 exon
chr1:75538412-75538429
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCTGATTTCCTTGCTTTCAGTGA
3' ss Score
8.26
5' ss Seq
TCGGTATGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTGCACCTCCAGCTGATGGCACAGAGGAGATTGCCACTGTCAGACTGATTATTACAGGTCAAGGGGTCAATATTGAGGAGAAGAAAAATGTCCTGATCCACAAGGCAAACAGTGGCACCTTCATTCAAATGGACAAGCCCATCTATAAACCAGGGCAAACAG
Seq A exon
TGAAATTTCGTATTGTGACTCTGGATGAGGACTTCATTGCATTTAATGATTCG
Seq C2 exon
ATTTCCGTGTTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=29.1)
A:
PF0183514=A2M_N=FE(18.1=100)
C2:
PF0183514=A2M_N=FE(5.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]