GgaEX0025945 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75537014-75539090:+
Coord C1 exon
chr1:75537014-75537176
Coord A exon
chr1:75538412-75538429
Coord C2 exon
chr1:75538931-75539090
Length
18 bp
Sequences
Splice sites
3' ss Seq
CACTTTTCTTTCCCTCCCAGATT
3' ss Score
10.64
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTGCACCTCCAGCTGATGGCACAGAGGAGATTGCCACTGTCAGACTGATTATTACAGGTCAAGGGGTCAATATTGAGGAGAAGAAAAATGTCCTGATCCACAAGGCAAACAGTGGCACCTTCATTCAAATGGACAAGCCCATCTATAAACCAGGGCAAACAG
Seq A exon
ATTTCCGTGTTTCTCCAG
Seq C2 exon
GACCCCAAGAACAACCGGATAGAGCAGTGGCTGAATGTGGTGCCCCAAGAAGGCATTGCAGATCTGTCTTTCCAGCTAAGTGATGAGCCTCTGCTGGGGACATATGTCATCAATGTAACCAACAGGAAAATATATGACAGCTTCACCGTTGAGGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=29.1)
A:
PF0183514=A2M_N=FE(5.3=100)
C2:
PF0183514=A2M_N=FE(56.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGATCCACAAGGCAAACA
R:
CCACTGCTCTATCCGGTTGTT
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]