GgaEX0026213 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20778167-20778913:+
Coord C1 exon
chr8:20778167-20778300
Coord A exon
chr8:20778392-20778456
Coord C2 exon
chr8:20778831-20778913
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCAACTACTTTACAGGCA
3' ss Score
7.13
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAGACCTGGGGAAGATGACCTACAGCACCATGTGCATCAAGGAGAGCCTTCGCCTCTACCCACCGGTGCCTGGCGTGTCCCGGCAGCTCAGCAAGCCCATCACCTTCCATGATGGTCGCACCCTGCCAGAAG
Seq A exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
Seq C2 exon
GTGTTTGACCCACTGCGGTTTTCTCCAGAGAACGTATCTGGCAGGCACTCTCACGCCTTTCTGCCTTTTGCTGCTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.8=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAAGATGACCTACAGCA
R:
GTGCCTGCCAGATACGTTCTC
Band lengths:
174-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]