GgaINT0039284 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20778392-20778913:+
Coord C1 exon
chr8:20778392-20778456
Coord A exon
chr8:20778457-20778830
Coord C2 exon
chr8:20778831-20778913
Length
374 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGTATATACTTCATTCCCAGGTG
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
Seq A exon
GTAAGTTTTGGTGCTCAAGCAGTGGCATTTGTGCTGCCTCTGCAGTGGGTGTAGCAATGAAGTGCTCCAGGAAGTTTCTTGTAGTAGCAGGCATGAAGGTGATTTTGATTAGCTTATAGGTGAAGAATTAAACTACATCCATGCACCACTGTTTCTTAGTTGTAATCATTGCTCTGCCTGATTTGTGCTGGCAGCACTGCTCCGTGAAAGCCAAGGGAATCTGGTTTATGAGTTCCAGTCCACCTCAAAGTGCACCTTCTTTCCAGTGGAGTTGTTCAGAAATTACGGGGCGTTGCACTTCCGAGAGTACCAATCACAGTACCTTTGCTCCTTAAATAACTGTTTCTTTCTTGCTGTATATACTTCATTCCCAG
Seq C2 exon
GTGTTTGACCCACTGCGGTTTTCTCCAGAGAACGTATCTGGCAGGCACTCTCACGCCTTTCTGCCTTTTGCTGCTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.6=100)
A:
NA
C2:
PF0006717=p450=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]