GgaINT0039284 @ galGal3
Intron Retention
Gene
ENSGALG00000020687 | E1C120_CHICK
Description
NA
Coordinates
chr8:22600403-22600924:+
Coord C1 exon
chr8:22600403-22600467
Coord A exon
chr8:22600468-22600841
Coord C2 exon
chr8:22600842-22600924
Length
374 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGTATATACTTCATTCCCAGGTG
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
Seq A exon
GTAAGTTTTGGTGCTCAAGCAGTGGCATTTGTGCTGCCTCTGCAGTGGGTGTAGCAATGAAGTGCTCCAGGAAGTTTCTTGTAGTAGCAGGCATGAAGGTGATTTTGATTAGCTTATAGGTGAAGAATTAAACTACATCCATGCACCACTGTTTCTTAGTTGTAATCATTGCTCTGCCTGATTTGTGCTGGCAGCACTGCTCCGTGAAAGCCAAGGGAATCTGGTTTATGAGTTCCAGTCCACCTCAAAGTGCACCTTCTTTCCAGTGGAGTTGTTCAGAAATTACGGGGCGTTGCACTTCCGAGAGTACCAATCACAGTACCTTTGCTCCTTAAATAACTGTTTCTTTCTTGCTGTATATACTTCATTCCCAG
Seq C2 exon
GTGTTTGACCCACTGCGGTTTTCTCCAGAGAACGTATCTGGCAGGCACTCTCACGCCTTTCTGCCTTTTGCTGCTGGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020687:ENSGALT00000017043:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]