MmuINT0045348 @ mm9
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115298251-115298493:-
Coord C1 exon
chr4:115298429-115298493
Coord A exon
chr4:115298334-115298428
Coord C2 exon
chr4:115298251-115298333
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
AGCCCTATCTATCTCCTTAGGTC
3' ss Score
10.31
Exon sequences
Seq C1 exon
GCAGCCTGATCTCTCTGCACATCTATGCCCTCCATCGGAACAGTGCTGTGTGGCCTGACCCAGAG
Seq A exon
GTACAGTGTCTCTGGGCCTGGAGGTTAGACAGGGTATGGGTTACCCTCTGCCAGGATTTGGTGAGTACTTAATAAAGCCCTATCTATCTCCTTAG
Seq C2 exon
GTCTTTGACCCACTGCGCTTTTCTCCTGAGAATATGACAGGACGGCATCCCTTTGCCTTCATGCCTTTTTCTGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-Cyp4b1:NM_007823:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.4=100)
A:
NA
C2:
PF0006717=p450=PD(7.2=93.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGATCTCTCTGCACAT
R:
GCCCTGCAGAAAAAGGCATGA
Band lengths:
143-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: