GgaEX0026524 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:305128-305750:-
Coord C1 exon
chr19:305626-305750
Coord A exon
chr19:305426-305555
Coord C2 exon
chr19:305128-305230
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCTCACTGCAATTTCTGCAGGGC
3' ss Score
6.71
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGGTGGAGATGCCTGTGCGGAGGAAGCGTGGTTCCCTGAGCCCACCATCTGCATCGGGGAGCAGTGGCAAGCGCAAGCGGAAGATCCAGTTGCTGTCGTCTCGCCGGGGGGACCAGCTGGCACTG
Seq A exon
GGCTGGGGGGAGACTGACCTGCCTGCCCTCAGGAAGGAGGCCCTGTCCTTGGCGGAGTGGGAAGTGACGCTATCCCCAGCCCCAGTGTCTGGTGGGCTGTGCGTGATTGTGCCACCTGCTGCCGGACCAG
Seq C2 exon
CCCCCGCCGCCTCAGCTGGGCTACTCCATTACGTCGGAGGACCTGGACGCGGAGAAGAAGGCAGCGTTGCAGTGGTTCAACAAAGTCTTGGAGGATAAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694_MULTIEX1-4/6=3-5
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.182 C2=0.657
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(19.9=100)
A:
PF152291=POM121=PD(0.6=2.3)
C2:
PF152291=POM121=PD(14.7=88.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGATGCCTGTGCGG
R:
CAGGCTTATCCTCCAAGACTTTGT
Band lengths:
226-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]