GgaEX0026524 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE56]
Coordinates
chr19:304193-304818:-
Coord C1 exon
chr19:304691-304818
Coord A exon
chr19:304491-304620
Coord C2 exon
chr19:304193-304295
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCTCACTGCAATTTCTGCAGGGC
3' ss Score
6.71
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAGTGGTGGAGATGCCTGTGCGGAGGAAGCGTGGTTCCCTGAGCCCACCATCTGCATCGGGGAGCAGTGGCAAGCGCAAGCGGAAGATCCAGTTGCTGTCGTCTCGCCGGGGGGACCAGCTGGCACTG
Seq A exon
GGCTGGGGGGAGACTGACCTGCCTGCCCTCAGGAAGGAGGCCCTGTCCTTGGCGGAGTGGGAAGTGACGCTATCCCCAGCCCCAGTGTCTGGTGGGCTGTGCGTGATTGTGCCACCTGCTGCCGGACCAG
Seq C2 exon
CCCCCGCCGCCTCAGCTGGGCTACTCCATTACGTCGGAGGACCTGGACGCGGAGAAGAAGGCAGCGTTGCAGTGGTTCAACAAAGTCTTGGAGGATAAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694_MULTIEX1-5/9=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.136 C2=0.612
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(17.4=100)
A:
PF152291=POM121=PD(0.5=2.3)
C2:
PF152291=POM121=PD(12.9=88.6)
Main Inclusion Isoform:
ENSGALT00000001368fB3335
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGTGGAGATGCCTGTG
R:
CAGGCTTATCCTCCAAGACTTTGT
Band lengths:
231-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]