GgaEX0026593 @ galGal3
Exon Skipping
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:732799-733932:-
Coord C1 exon
chrUn_random:733832-733932
Coord A exon
chrUn_random:733584-733697
Coord C2 exon
chrUn_random:732799-733123
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGTCCCTCCGTGCTGCTCAGGGC
3' ss Score
5.57
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
AGAACTGCCACCAGGTGTTCTACACCCAGAAGGGCCTGGGCAGCCACATGTGCTTCCGTGACGAGCAGTGGCTGCTGCCCCAGAGGAGAGAGGAGCCGCAG
Seq A exon
GGCTGTGCTGCAGAGGACGGATCCGCTGCGAGGCCGGAGCTGCAGGAGGAGCCCTGCGAGGCCGGGGCTGCGCTGCTCATCCCCGTCTCAGTGCCAGTGCTGCCTGGGGGTGAG
Seq C2 exon
GTGACCCCCAAGGAGAGCCAGGATGGGAAGAGCCCTCAGCTCAGCTCGCACCCGAAGAAGAGGAAGCGGCAGATTCTCCCCAAACCCCTCTTCATCCCCCCCCCGCCGCCCCCCGAGGCGCAGCCGGGCCCTGGGGGCTGCTACCGCAGCAACCTGCGCTCCCCGGTGCTGCTGATGGACCGCCTGCTGCGGGACCTGCTGCAGTGCTCGCCCTACACCCCCCCGCCCATGCTCAGCCCCGTCCGCGAGGGCTCGGGGCTCTACTTCAACGCCGTCTGCTCATCCACTGCTGCAGAGCCTTGTCGGCTCTTGGGCAGCGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619-'2-3,'2-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.526 C2=0.477
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGTGCTTCCGTGACGAG
R:
CAGGCGGTCCATCAGCAG
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]