GgaINT0002390 @ galGal3
Intron Retention
Gene
ENSGALG00000022619 | ZNF541
Description
NA
Coordinates
chrUn_random:733584-733991:-
Coord C1 exon
chrUn_random:733790-733991
Coord A exon
chrUn_random:733698-733789
Coord C2 exon
chrUn_random:733584-733697
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GGTCCCTCCGTGCTGCTCAGGGC
3' ss Score
5.57
Exon sequences
Seq C1 exon
TGCTACGAGCAGCGCTGCTCCCACCAACAGCAGCGACTGCGACGGCGTTTTTCTATGCAAGAACTGCCACCAGGTGTTCTACACCCAGAAGGGCCTGGGCAGCCACATGTGCTTCCGTGACGAGCAGTGGCTGCTGCCCCAGAGGAGAGAGGAGCCGCAGGTGAAGGGAAAGCAGAGGGGTCGGGGCGCTCAGAAAGCAAAG
Seq A exon
GTGGGGGGCAGGGATGGGAGCGGAGCCGTCCCGAATCCCAGCGCCCTCCCCCAGAGCGCTGTGTGACCGCCGGGTCCCTCCGTGCTGCTCAG
Seq C2 exon
GGCTGTGCTGCAGAGGACGGATCCGCTGCGAGGCCGGAGCTGCAGGAGGAGCCCTGCGAGGCCGGGGCTGCGCTGCTCATCCCCGTCTCAGTGCCAGTGCTGCCTGGGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022619:ENSGALT00000036197:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACTGCCACCAGGTGTT
R:
GATCCGTCCTCTGCAGCACA
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]