GgaEX0026618 @ galGal3
Exon Skipping
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111599961-111601920:+
Coord C1 exon
chr3:111599961-111600134
Coord A exon
chr3:111600739-111600880
Coord C2 exon
chr3:111601736-111601920
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACCTCATCCACTTCTTTCAGGAG
3' ss Score
9.1
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGTATAACATCTTCCCATACCTTGGATTCCTCCTGAGGGCCAACAAGACTCTTCTCAAAAACAGAGACGAATTCCATGCTTATGTAAAAGCTACTTTTCTAGAAAATCTCAAAACTCTGGACAAAAATGATCAAAGAAGTTTCATTGATGCTTTCCTTGTTAAACAGCAGGAG
Seq A exon
GAGAAATCCACTACCAATGGGTATTTCCATAATGGTAACCTGCTAAGCTTGGTGAGCAACTTGTTCACTGCTGGTGTTGAGACCATTTCCACCACACTAAACTGGAGCTTTCTGCTGATGCTAAAGTACCCTGAAATTCAGA
Seq C2 exon
GAAAGGTCCAAGAAGAGATAGAGCAAGTGATCGGGTCAAACCCCCCACGCATTGAGCATCGAACTCAAATGCCATATACAGATGCTGTTATCCATGAAGTTCAGCGGTTTGCTAATATCCTGCCATTGGATTTGCCTCATGAGACTGCTGAAGATGTCACTCTCAAAGACTATTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812-'5-8,'5-5,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGGGCCAACAAGACTC
R:
GCAAACCGCTGAACTTCATGG
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]