GgaEX1004283 @ galGal3
Exon Skipping
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111598601-111600880:+
Coord C1 exon
chr3:111598601-111598761
Coord A exon
chr3:111599961-111600134
Coord C2 exon
chr3:111600739-111600880
Length
174 bp
Sequences
Splice sites
3' ss Seq
AACAGCTTTCACTCTTGTAGATG
3' ss Score
7.92
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GAAAACCCTTTGATGCTAGTAAAATAATTAATGCAGCAGTTGCTAACATAATTGTGTCAATATTACTTGGAAAACGATTTGACTACAAAGACTCCAGATTTATAAGGCTTCAACATCTGACCAATGAAAGCATGAGGCTTGCAGGGAAACCTTTGGTTACG
Seq A exon
ATGTATAACATCTTCCCATACCTTGGATTCCTCCTGAGGGCCAACAAGACTCTTCTCAAAAACAGAGACGAATTCCATGCTTATGTAAAAGCTACTTTTCTAGAAAATCTCAAAACTCTGGACAAAAATGATCAAAGAAGTTTCATTGATGCTTTCCTTGTTAAACAGCAGGAG
Seq C2 exon
GAGAAATCCACTACCAATGGGTATTTCCATAATGGTAACCTGCTAAGCTTGGTGAGCAACTTGTTCACTGCTGGTGTTGAGACCATTTCCACCACACTAAACTGGAGCTTTCTGCTGATGCTAAAGTACCCTGAAATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCTAACATAATTGTGTCA
R:
AGGGTACTTTAGCATCAGCAGA
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]