MmuEX6032709 @ mm10
Exon Skipping
Gene
ENSMUSG00000060613 | Cyp2c70
Description
cytochrome P450, family 2, subfamily c, polypeptide 70 [Source:MGI Symbol;Acc:MGI:2385878]
Coordinates
chr19:40164352-40167623:-
Coord C1 exon
chr19:40167463-40167623
Coord A exon
chr19:40165328-40165501
Coord C2 exon
chr19:40164352-40164493
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGCATTTGTTTCTCTTCTAGCTG
3' ss Score
10.03
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG
Seq A exon
CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG
Seq C2 exon
GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060613-'11-6,'11-5,13-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTTCCCTGCAATGTGA
R:
CAGCAGGAGCAAAAGCCCATA
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types