BtaEX6099869 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023549 | CYP2C19
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 19 (CYP2C19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109792]
Coordinates
chr26:16362560-16368369:-
Coord C1 exon
chr26:16368209-16368369
Coord A exon
chr26:16363695-16363871
Coord C2 exon
chr26:16362560-16362701
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATGATTCTTTCATCTTTCAGCTC
3' ss Score
10.33
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GATCTCCTTGTGATCCTACTTTACTTCTGAGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCGGAATCGTTTTGAGTACAATGATGAGAGATTGCTAACCTTGATAAAATATTTTAATGAAAATTCAAGGCTTGTAAGCACCCCCTGGGTAGAG
Seq A exon
CTCTACAATACTTTCCCCTCTTTACTACATTATTTCCCAGGAAGTCATAATACAATATTTAAAAACATGACTGAGCAAAGAAAGTTTATTTTGGAGGAAATAAAGAAACACCAAGAATCCCTGGACCTCAATAACCCTCAAGATTTTATTGATTACTTTCTGATTAAAATGGAAAAG
Seq C2 exon
GAAAAACACAATAAACATTCTGAATTTACCATGGACAACTTGATCACCACCGTATGGGACGTGTTTAGTGCTGGAACAGAGACAACAAGCCTCACTCTGAGATATGGACTCCTGCTCCTGCTGAAGCACCCAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023549-'5-6,'5-3,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAATGTGATCTGCTCCA
R:
CAGCAGGAGCAGGAGTCCATA
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]