RnoEX0025859 @ rn6
Exon Skipping
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259269443-259273105:-
Coord C1 exon
chr1:259272945-259273105
Coord A exon
chr1:259270446-259270619
Coord C2 exon
chr1:259269443-259269584
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGCATTTGTTTCTCTTCTAGTTG
3' ss Score
9.64
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GGTCCCCCTGTGACCCCAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCCAGTGTCATTTTCCAGCACCGTTTTGACTACAGTGATGAGAAATTCCAAAAATTCATAGAGAATTTCCATACAAAAATTGAAATTTTAGCATCTCCTTGGGCCCAG
Seq A exon
TTGTGCAGTGCCTATCCTGTTCTATACTATCTCCCGGGAATCCATAACAAATTCTTAAAAGATGTGACTGAACAGAAAAAGTTCATCTTGATGGAAATAAACAGGCATCGAGCATCTCTGAACCTCAGTAACCCTCAGGACTTTATTGACTATTTCCTGATTAAAATGGAAAAG
Seq C2 exon
GAAAAACACAATGAAAAGTCTGAATTTACCATGGACAACCTGATAGTCACCATAGGTGATCTTTTTGGAGCAGGAACAGAGACAACGAGTTCCACCATAAAATATGGGCTTTTGCTCTTGCTGAAGTACCCAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTTCCCTGCAATGTGA
R:
TTCAGCAAGAGCAAAAGCCCA
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]