RnoEX0048057 @ rn6
Exon Skipping
Gene
ENSRNOG00000001466 | LOC100361492
Description
cytochrome P450, family 2, subfamily c, polypeptide 55-like [Source:RGD Symbol;Acc:2320073]
Coordinates
chr1:258238612-258246955:+
Coord C1 exon
chr1:258238612-258238772
Coord A exon
chr1:258242851-258243027
Coord C2 exon
chr1:258246814-258246955
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATACTTTTAAATCTTTAAGGTT
3' ss Score
7.77
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTCACTCTGTGATCCCACATTCATCTTGAGCTGTGCTCCCTCCAACGTGATCTGCTCAGTTATTTTCCACAACCGTTTTGATTACAAAGATGAGAATTTCCTTAACTTGATGGAGAAATTCAACGAAAACTTTAAAATCTTGAACTCCCCCTGGATGCAG
Seq A exon
GTTTGCAATGCTATCCCTGCCTTCATTGATTATCTCCCAGGAAGCCATAACAAAGTAATTAAAAATTTTGCTGAAATAAAAAGTTATATTTTGAGACGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGTTTTCTGATCAAAATAGAACAG
Seq C2 exon
GAAAAACACAATCCCTGTACTGAGTTTACTATTCAAAGCTTGGTGGCTACTGTAACTGATGTGTTTGTAGCTGGATCAGAAACCACAAGCACTACCCTGAGATATGGACTTTTGCTCCTACTGAAACACACAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001466-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATTCATCTTGAGCTGTGC
R:
TCTCAGGGTAGTGCTTGTGGT
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]