MmuEX0013334 @ mm10
Exon Skipping
Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39018643-39035632:+
Coord C1 exon
chr19:39018643-39018803
Coord A exon
chr19:39031262-39031438
Coord C2 exon
chr19:39035445-39035632
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATTTTCAAAAATGTTTAAGGTC
3' ss Score
5.34
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAATGTGATCTGTTCAGTTATTTTCCACAATCGTTTTGATTATAAAGATGAGAAGTTTCTTAACTTGATGGAGAGACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG
Seq A exon
GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG
Seq C2 exon
CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCCACATTCATCCTGAGC
R:
ATGGCATCTGTGTAGGGCATG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types