RnoEX0025869 @ rn6
Exon Skipping
Gene
ENSRNOG00000013241 | Cyp2c24
Description
cytochrome P450, family 2, subfamily c, polypeptide 24 [Source:RGD Symbol;Acc:1563697]
Coordinates
chr1:258097371-258134175:+
Coord C1 exon
chr1:258097371-258097531
Coord A exon
chr1:258127347-258127523
Coord C2 exon
chr1:258134034-258134175
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATTTTCAAAAATGTTTAAGGTT
3' ss Score
5.35
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTCACTCTGTGATCCCACATTCATCCTGAGCTGTGCTCCCTCCAACGTGATCTGCTCAGTTGTTTTCCATAATCGTTTTGATTATAAAGATGAGAATTTCCTTAACTTGATGGAGAAACTCAATGAAAACTTTAAAATCTTGAACTCCCCATGGATGCAG
Seq A exon
GTTTGCAATGCTCTCCCTGCCTTCATCGATTATCTCCCAGGAAGCCATAATAGAGTAATTAAAAATTTTGCTGAAATAAAAAGTTATATTTTGAGACGAGTGAAAGAACATCAGGAAACACTGGACATGGACAATCCTCGGGACTTTATTGACTGTTTCCTGATCAAAATGGAACAG
Seq C2 exon
GAAAAACACAATCCCCGTACTGAGTTTACTATTGAAAGCTTGATGGCTACTGTAAGTGATGTATTTGTAGCTGGATCAGAAACCACAAGCACTACCCTGAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013241-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
88%=75=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACATTCATCCTGAGCTGT
R:
TCTCAGGGTAGTGCTTGTGGT
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]