GgaEX0026657 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75687674-75688458:+
Coord C1 exon
chr1:75687674-75687954
Coord A exon
chr1:75688183-75688287
Coord C2 exon
chr1:75688374-75688458
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTATCTGTCACAGAGG
3' ss Score
7.83
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
TCCAGTCTGCTTGGCTAGGAAATGGAATCCTAGTACAAAGTTGCAGATGGCTCCTACTCCCTCTTGACATCACCTCCAGTTATCACTCCACAACACCTCAGCAAGCCAACTGCAGCCTGCACTACATGGTCTGCCATGATCATAAAGCCCAGGTGAGCCTTCTGGAAGCTCACTGTCCTCTTTAATTTGCATGGCTGCCCTGAATTTCTCCTAGTTCTCCCAAGATGGTCACTGTCCATGACCTCTCCTGCAGCAGGATTTGGATGTGAGGTCATCTTGTG
Seq A exon
AGGCTGGCTGAATGCCAGTGGTTTTCATTGACTTCAGTGGGACGTGTAGATGACACTGGCCACAAAAATCTGATAGCTTGGATGCAAAACGCTTTCAGAACATTT
Seq C2 exon
TGCTTCCAAAATTTGAAGTAACAGTGAAAATGCCCAAGGTTATCACCATTCTTGATGAGAAGCTGAAGGTGACAGTTTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'14-11,'14-10,15-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000037199fB3344
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGCACTACATGGTCTG
R:
CCACAAACTGTCACCTTCAGCT
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]