GgaEX0026657 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79339854-79340587:+
Coord C1 exon
chr1:79339854-79339954
Coord A exon
chr1:79340312-79340416
Coord C2 exon
chr1:79340503-79340587
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTATCTGTCACAGAGG
3' ss Score
7.83
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
TCCTACTCCCTCTTGACATCACCTCCAGTTATCACTCCACAACACCTCAGCAAGTCAACTGCAGCCTGCACTACATGGTCTGCCATGATCATAAAGCCCAG
Seq A exon
AGGCTGGCTGAATGCCAGTGGTTTTCATTGACTTCAGTGGGACGTGTAGATGACACTGGCCACAAAAATCTGATAGCTTGGATGCAAAACGCTTTCAGAACATTT
Seq C2 exon
TGCTTCCAAAATTTGAAGTAACAGTGAAAATGCCCAAGGTTATCACCATTCTTGATGAGAAGCTGAAGGTGACAGTTTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'9-10,'9-9,11-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTACTCCCTCTTGACATCACC
R:
AGACCACAAACTGTCACCTTCA
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]