GgaEX0026666 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79338808-79340587:+
Coord C1 exon
chr1:79338808-79338828
Coord A exon
chr1:79339146-79339314
Coord C2 exon
chr1:79340503-79340587
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTGGTCTCATTATCTGCAGGAC
3' ss Score
10.03
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
CTTCCGCTGGTCTATATTGAG
Seq A exon
GACCCAAAGAAAAACCGTTTGTACCAGTGGACAAAGGCTGAGTTAAAGGAAGGGTTAATCCAGCTCTCTTTCAACCTCACTACTGAGCCCATTCAAGGGACTTACGCAGTGGTGGCACAGAAGGCTTTTGGGAAGACAATCCATCATCCCTTCTCTGTGGAGGAGTATG
Seq C2 exon
TGCTTCCAAAATTTGAAGTAACAGTGAAAATGCCCAAGGTTATCACCATTCTTGATGAGAAGCTGAAGGTGACAGTTTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'6-10,'6-6,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]