MmuEX6007264 @ mm10
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128521101-128523829:-
Coord C1 exon
chr6:128523777-128523829
Coord A exon
chr6:128522016-128522184
Coord C2 exon
chr6:128521101-128521185
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCATAATATCTTTCCATAGACT
3' ss Score
8.82
5' ss Seq
ACGGTATGA
5' ss Score
8.54
Exon sequences
Seq C1 exon
TGAAATTCCGAGTTGTTTCTGTGGACATCAGTTTTCGCCCGTTGAATGAAACG
Seq A exon
ACTCCCAAGAGGAACCGAATTTTTCAATGGCAAAATATCCATCTGGCAGGAGGACTCCACCAGCTCTCTTTCCCACTGTCTGTTGAGCCAGCTCTGGGTATCTACAAGGTTGTAGTGCAGAAGGACTCAGGGAAGAAAATAGAACACTCCTTTGAGGTGAAGGAATACG
Seq C2 exon
TTTTACCCAAATTTGAGGTGATAATAAAAATGCAGAAGACTATGGCTTTCCTGGAAGAGGAACTTCCTATAACTGCTTGTGGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'7-8,'7-6,10-8=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(18.1=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
ENSMUST00000112132fB15469
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATTCCGAGTTGTTTCTGTGG
R:
ACGCCACAAGCAGTTATAGGA
Band lengths:
138-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types