BtaEX6024089 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101215371-101220863:+
Coord C1 exon
chr5:101215371-101215391
Coord A exon
chr5:101215845-101216013
Coord C2 exon
chr5:101220779-101220863
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTGATGCTTTTACATATAGAAC
3' ss Score
6.19
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTCCTGGTGGTTTATATTGAG
Seq A exon
AACCCCAAAAGGAACCGGATTTTCCAATGGCCCAGTTTCAAATTGCAAGGGGGACTCAGTCAGCTCTCTTTCCCACTCTCAGTGGAGCCCGCACTGGGTCCCTACAAGGTGGTACTGCTGAAGGAGCCTGGGAAAAGAATAGAGCACTCTTTTGAAGTGGATGAATATG
Seq C2 exon
TTTTGCCCAAATTTGAGGTCCAAGTGAAAATGCCCAAGAAGATTAGTTTCCTAGAGGATGAATTTGAGGTTTCTGTCTGCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]