RnoEX6015249 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161845517-161847146:-
Coord C1 exon
chr4:161847126-161847146
Coord A exon
chr4:161846430-161846598
Coord C2 exon
chr4:161845517-161845601
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCATAATATCTTTCTGTAGAAT
3' ss Score
8.32
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTCCCCGTCGTTTATATTGAG
Seq A exon
AATCCCAAGAGGAACAGAATCTTTCAATGGCAAAATGTCGATCTACCAGGAGGACTGCACCAGCTCTCTTTCCCACTGTCTGTTGAGCCAGCTCTAGGCATCTACAAGGTTGTAGTGCAGAAGGACTCAGGGAAGAAAATAGAACATTCCTTTGAGGTGAAGGAATATG
Seq C2 exon
TTTTACCCAAATTTGAGGTGCAAGTAAAAATGCCCAAGACGATGGCTTTCCTGGAAGAGGAACTTGTTGTAACTGCTTGTGGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]