GgaEX6003270 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75736982-75741890:-
Coord C1 exon
chr1:75741870-75741890
Coord A exon
chr1:75738726-75738894
Coord C2 exon
chr1:75736982-75737066
Length
169 bp
Sequences
Splice sites
3' ss Seq
GGAGTTATCCTCCCCTGCAGGAT
3' ss Score
8.1
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TTTCCATTCGTCTATGTTCAG
Seq A exon
GATCCCCAGAGAAACCGTGTGTATCAATGGCAAGGGGTAGAACTTGAGACTGGCCTTATACAGCTCTCCTTCCCCCTCACCTCTGACCCCATCCAAGGCTCCTACAAAATAGTTGTGCAGAAGAACTTCATCTCCCATGTGGCGCACTCCTTCACTGTAGAGGAATATG
Seq C2 exon
TGCTGCCCAAGTATGAGGTCCTGGTGAAGCTGCCTAAGATGATTACTATTGAGGATAAGGAACTTCCAGTGTCCGTCTGTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(6.4=100)
A:
PF0183514=A2M_N=PD(55.3=91.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]